PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0602.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 237aa    MW: 25971.8 Da    PI: 6.7922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0602.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Kaladp0053s0602.1.p 61 YTCTFCRREFRSAQALGGHMNVH 83
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-65888No hitNo description
Gene3DG3DSA:3.30.160.600.0015986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00666183IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-56184IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPPDVARLP VPHLQSPLLA PPKYSWTQTG NNDEDEESWE VRAFAEDTAN GMGTTWPPRS  60
YTCTFCRREF RSAQALGGHM NVHRRDRARL HQTQNSLTKI NSPNPGATTS SSTSGGSTLL  120
IPTQEFLVNG GLCLLYQLRN ESPNPNDEPS TLLSISPYPA SSYKPSFIAT YPQATYPSSV  180
ARTHHSSTIS MPLTSLNRIY HKNSMTSEGE NSGQHNIGEL DLELRLGHGP MSYLDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135683229superman protein
2l1o_A2e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039516.11e-57Palmate-like pentafoliata 1 transcription factor
TrEMBLA0A061G4961e-57A0A061G496_THECC; Palmate-like pentafoliata 1 transcription factor
STRINGPOPTR_0003s09000.12e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-33C2H2 family protein